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1

Vibrational echo experiments on red blood cells: Comparison of the dynamics of cytoplasmic and aqueous hemoglobin

Brian L McClain, Ilya J Finkelstein, M.D Fayer

Journal:

Chemical Physics Letters

Year:

2004

Language:

english

File:

PDF, 232 KB

english, 2004

2

Molecular Traffic Jams on DNA

Finkelstein, Ilya J., Greene, Eric C.

Journal:

Annual Review of Biophysics

Year:

2013

Language:

english

File:

PDF, 1.58 MB

english, 2013

3

Dynamics of Hemoglobin in Human Erythrocytes and in Solution: Influence of Viscosity Studied by Ultrafast Vibrational Echo Experiments

McClain, Brian L., Finkelstein, Ilya J., Fayer, M. D.

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 124 KB

english, 2004

4

Single-molecule imaging reveals mechanisms of protein disruption by a DNA translocase

Finkelstein, Ilya J., Visnapuu, Mari-Liis, Greene, Eric C.

Journal:

Year:

2010

Language:

english

File:

PDF, 499 KB

english, 2010

5

XPD Helicase Speeds through a Molecular Traffic Jam

Ilya J. Finkelstein, Eric C. Greene

Journal:

Year:

2009

Language:

english

File:

PDF, 205 KB

english, 2009

6

The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion

Wang, Feng, Redding, Sy, Finkelstein, Ilya J, Gorman, Jason, Reichman, David R, Greene, Eric C

Journal:

Nature Structural and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 6.33 MB

english, 2012

7

Single Molecule Study of Promoter Search By E Coli RNAP

Wang, Feng, Finkelstein, Ilya, Greene, Eric

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 79 KB

english, 2010

8

Molecular Traffic Jams on DNA Highways: Single Molecule Observation of Collisions Between RecBCD Helicase and DNA Binding Proteins

Finkelstein, Ilya J., Greene, Eric C.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 119 KB

english, 2010

9

Viscosity-Dependent Protein Dynamics

Finkelstein, Ilya J., Massari, Aaron M., Fayer, M.D.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 164 KB

english, 2007

10

Cytochrome c 552 Mutants: Structure and Dynamics at the Active Site Probed by Multidimensional NMR and Vibration Echo Spectroscopy †

Massari, Aaron M., McClain, Brian L., Finkelstein, Ilya J., Lee, Andrew P., Reynolds, Heather L., Bren, Kara L., Fayer, Michael D.

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 140 KB

english, 2006

11

Single-Stranded DNA Curtains for Real-Time Single-Molecule Visualization of Protein–Nucleic Acid Interactions

Gibb, Bryan, Silverstein, Tim D., Finkelstein, Ilya J., Greene, Eric C.

Journal:

Analytical Chemistry

Year:

2012

Language:

english

File:

PDF, 4.20 MB

english, 2012

12

Single-Molecule Imaging Reveals Mechanisms of Roadblock Clearance by DNA Motor Enzymes

Finkelstein, Ilya J., Yil Lee, Ja, Crozat, Estelle, Sherratt, David J., Greene, Eric C.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 85 KB

english, 2012

13

Single-Molecule Imaging of FtsK Translocation Reveals Mechanistic Features of Protein-Protein Collisions on DNA

Lee, Ja Yil, Finkelstein, Ilya J., Arciszewska, Lidia K., Sherratt, David J., Greene, Eric C.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.18 MB

english, 2014

14

Single-Stranded DNA Curtains for Real-Time Single-Molecule Visualization of Protein−Nucleic Acid Interactions

Gibb, Bryan, Silverstein, Tim D., Finkelstein, Ilya J., Greene, Eric C.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 66 KB

english, 2013

15

E. Coli RNA Polymerase Searches for Promoters through 3D Diffusion

Wang, Feng, Redding, Sy, Finkelstein, Ilya, Gorman, Jason, Reichman, David, Greene, Eric

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

16

Single-Molecule DNA Curtains Reveals the Details of KOPS Targeting, Translocation, and Collision with Protein Roadblocks of DNA Translocase FtsK

Lee, Ja Yil, Finkelstein, Ilya J., Crozat, Estelle, Sherratt, David J., Greene, Eric C.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

17

High-throughput single-molecule studies of protein–DNA interactions

Robison, Aaron D., Finkelstein, Ilya J.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

18

Myoglobin-CO Substate Structures and Dynamics: Multidimensional Vibrational Echoes and Molecular Dynamics Simulations

Merchant, Kusai A., Noid, W. G., Akiyama, Ryo, Finkelstein, Ilya J., Goun, Alexei, McClain, Brian L., Loring, Roger F., Fayer, M. D.

Journal:

Journal of the American Chemical Society

Year:

2003

Language:

english

File:

PDF, 699 KB

english, 2003

19

3D-Printed Microfluidic Microdissector for High-Throughput Studies of Cellular Aging

Spivey, Eric C., Xhemalce, Blerta, Shear, Jason B., Finkelstein, Ilya J.

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 1.57 MB

english, 2014

20

Rapid Prototyping of Multichannel Microfluidic Devices for Single-Molecule DNA Curtain Imaging

Robison, Aaron D., Finkelstein, Ilya J.

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 3.06 MB

english, 2014

21

Probing dynamics of complex molecular systems with ultrafast 2D IR vibrational echo spectroscopy

Finkelstein, Ilya J., Zheng, Junrong, Ishikawa, Haruto, Kim, Seongheun, Kwak, Kyungwon, Fayer, Michael D.

Journal:

Physical Chemistry Chemical Physics

Year:

2007

Language:

english

File:

PDF, 2.12 MB

english, 2007

22

The Influence of Aqueous versus Glassy Solvents on Protein Dynamics: Vibrational Echo Experiments and Molecular Dynamics Simulations

Massari, Aaron M., Finkelstein, Ilya J., McClain, Brian L., Goj, Anne, Wen, Xin, Bren, Kara L., Loring, Roger F., Fayer, Michael D.

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 144 KB

english, 2005

23

Ultrafast Dynamics of Myoglobin without the Distal Histidine: Stimulated Vibrational Echo Experiments and Molecular Dynamics Simulations

Finkelstein, Ilya J., Goj, Anne, McClain, Brian L., Massari, Aaron M., Merchant, Kusai A., Loring, Roger F., Fayer, M. D.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 113 KB

english, 2005

24

From cradle to grave: high-throughput studies of aging in model organisms

Spivey, Eric C., Finkelstein, Ilya J.

Journal:

Molecular BioSystems

Year:

2014

Language:

english

File:

PDF, 2.49 MB

english, 2014

25

Dynamics of Proteins Encapsulated in Silica Sol−Gel Glasses Studied with IR Vibrational Echo Spectroscopy

Massari, Aaron M., Finkelstein, Ilya J., Fayer, Michael D.

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 102 KB

english, 2006

26

Single molecule studies of homologous recombination

Finkelstein, Ilya J., Greene, Eric C.

Journal:

Molecular BioSystems

Year:

2008

Language:

english

File:

PDF, 2.60 MB

english, 2008

27

Fifth-order contributions to ultrafast spectrally resolved vibrational echoes: Heme-CO proteins

Finkelstein, Ilya J., McClain, Brian L., Fayer, M. D.

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 875 KB

english, 2004

28

Nucleosome Acidic Patch Promotes RNF168- and RING1B/BMI1-Dependent H2AX and H2A Ubiquitination and DNA Damage Signaling

Leung, Justin W., Agarwal, Poonam, Canny, Marella D., Gong, Fade, Robison, Aaron D., Finkelstein, Ilya J., Durocher, Daniel, Miller, Kyle M., Maizels, Nancy

Journal:

Year:

2014

Language:

english

File:

PDF, 6.83 MB

english, 2014

29

Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: A new approach

Kwak, Kyungwon, Park, Sungnam, Finkelstein, Ilya J., Fayer, M. D.

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 520 KB

english, 2007

30

Dynamic DNA binding licenses a repair factor to bypass roadblocks in search of DNA lesions

Brown, Maxwell W., Kim, Yoori, Williams, Gregory M., Huck, John D., Surtees, Jennifer A., Finkelstein, Ilya J.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.71 MB

english, 2016

31

Single-molecule imaging reveals the mechanism of Exo1 regulation by single-stranded DNA binding proteins

Myler, Logan R., Gallardo, Ignacio F., Zhou, Yi, Gong, Fade, Yang, Soo-Hyun, Wold, Marc S., Miller, Kyle M., Paull, Tanya T., Finkelstein, Ilya J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.96 MB

english, 2016

32

Visualizing the First Steps of Human Double-Strand Break Repair on a Crowded DNA Track

Myler, Logan, Gallardo, Ignacio, Kim, Yoori, Paull, Tanya T., Finkelstein, Ilya J.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 45 KB

english, 2016

33

Dynamic DNA Binding Licenses a Eukaryotic Repair Complex to Bypass Protein Roadblocks in Search of DNA Lesions

Brown, Maxwell W., Kim, Yoori, Williams, Gregory M., Huck, John D., Surtees, Jennifer A., Finkelstein, Ilya J.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 46 KB

english, 2016

34

High-Throughput Universal DNA Curtain Arrays for Single-Molecule Fluorescence Imaging

Gallardo, Ignacio F., Pasupathy, Praveenkumar, Brown, Maxwell, Manhart, Carol M., Neikirk, Dean P., Alani, Eric, Finkelstein, Ilya J.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.67 MB

english, 2015

35

Preventive maintenance of multistate systems subject to shocks

Finkelstein, Maxim, Gertsbakh, Ilya

Journal:

Applied Stochastic Models in Business and Industry

Year:

2016

Language:

english

File:

PDF, 346 KB

english, 2016

36

Conserved Sequence Preferences Contribute to Substrate Recognition by the Proteasome

Yu, Houqing, Singh Gautam, Amit K., Wilmington, Shameika R., Wylie, Dennis, Martinez-Fonts, Kirby, Kago, Grace, Warburton, Marie, Chavali, Sreenivas, Inobe, Tomonao, Finkelstein, Ilya J., Babu, M. Mad

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 16.63 MB

english, 2016

37

‘Time-free’ preventive maintenance of systems with structures described by signatures

Finkelstein, Maxim, Gertsbakh, Ilya

Journal:

Applied Stochastic Models in Business and Industry

Year:

2015

Language:

english

File:

PDF, 467 KB

english, 2015

38

Eukaryotic resectosomes: A single-molecule perspective

Myler, Logan R., Finkelstein, Ilya J.

Journal:

Progress in Biophysics and Molecular Biology

Year:

2016

Language:

english

File:

PDF, 2.34 MB

english, 2016

39

On a single discrete scale for preventive maintenance with two shock processes affecting a complex system

Finkelstein, Maxim, Gertsbakh, Ilya, Vaisman, Radislav

Journal:

Applied Stochastic Models in Business and Industry

Year:

2016

Language:

english

File:

PDF, 310 KB

english, 2016

40

Efficient modification of λ-DNA substrates for single-molecule studies

Kim, Yoori, de la Torre, Armando, Leal, Andrew A., Finkelstein, Ilya J.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.11 MB

english, 2017

41

Single-Molecule Imaging Reveals How Mre11-Rad50-Nbs1 Initiates DNA Break Repair

Myler, Logan R., Gallardo, Ignacio F., Soniat, Michael M., Deshpande, Rajashree A., Gonzalez, Xenia B., Kim, Yoori, Paull, Tanya T., Finkelstein, Ilya J.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.73 MB

english, 2017

42

Genome-Scale Biophysical Profiling of CRISPR Interference

Finkelstein, Ilya

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 40 KB

english, 2018

43

Distinct roles of XPF-ERCC1 and Rad1-Rad10-Saw1 in replication-coupled and uncoupled inter-strand crosslink repair

Seol, Ja-Hwan, Holland, Cory, Li, Xiaolei, Kim, Christopher, Li, Fuyang, Medina-Rivera, Melisa, Eichmiller, Robin, Gallardo, Ignacio F., Finkelstein, Ilya J., Hasty, Paul, Shim, Eun Yong, Surtees, Jen

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.56 MB

english, 2018

44

Molecular Heterogeneity in a Patient-Derived Glioblastoma Xenoline Is Regulated by Different Cancer Stem Cell Populations

Garner, Jo Meagan, Ellison, David W., Finkelstein, David, Ganguly, Debolina, Du, Ziyun, Sims, Michelle, Yang, Chuan He, Interiano, Rodrigo B., Davidoff, Andrew M., Pfeffer, Lawrence M., Ulasov, Ilya

Journal:

Year:

2015

Language:

english

File:

PDF, 18.16 MB

english, 2015

45

Kinetic Basis for DNA Target Specificity of CRISPR-Cas12a

Strohkendl, Isabel, Saifuddin, Fatema A., Rybarski, James R., Finkelstein, Ilya J., Russell, Rick

Journal:

Year:

2018

Language:

english

File:

PDF, 1.97 MB

english, 2018

46

Assessing Protein Dynamics on Low-Complexity Single-Stranded DNA Curtains

Schaub, Jeffrey M., Zhang, Hongshan, Soniat, Michael M., Finkelstein, Ilya J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.09 MB

english, 2018

47

Assembly and Translocation of a CRISPR-Cas Primed Acquisition Complex

Dillard, Kaylee E., Brown, Maxwell W., Johnson, Nicole V., Xiao, Yibei, Dolan, Adam, Hernandez, Erik, Dahlhauser, Samuel D., Kim, Yoori, Myler, Logan R., Anslyn, Eric V., Ke, Ailong, Finkelstein, Ilya

Journal:

Year:

2018

Language:

english

File:

PDF, 7.34 MB

english, 2018

48

Phage Mu Gam protein promotes NHEJ in concert with Escherichia coli ligase

Bhattacharyya, Sudipta, Soniat, Michael M., Walker, David, Jang, Sooin, Finkelstein, Ilya J., Harshey, Rasika M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

49

Intrinsically disordered regions regulate both catalytic and non-catalytic activities of the MutLα mismatch repair complex

Kim, Yoori, Furman, Christopher M, Manhart, Carol M, Alani, Eric, Finkelstein, Ilya J

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.58 MB

english, 2018

50

RPA Phosphorylation Inhibits DNA Resection

Soniat, Michael M., Myler, Logan R., Kuo, Hung-Che, Paull, Tanya T., Finkelstein, Ilya J.

Journal:

Year:

2019

Language:

english

File:

PDF, 3.08 MB

english, 2019